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1

Phylogeny of the Rosidae : A dense taxon sampling analysis

Sun, Miao, Naeem, Rehan, Su, Jun-Xia, Cao, Zhi-Yong, Burleigh, J. Gordon, Soltis, Pamela S., Soltis, Douglas E., Chen, Zhi-Duan

Journal:

Journal of Systematics and Evolution

Year:

2016

Language:

english

File:

PDF, 1.78 MB

english, 2016

2

Gene discovery from a pilot study of the transcriptomes from three diverse microbial eukaryotes: Corallomyxa tenera, Chilodonella uncinata, and Subulatomonas tetraspora

Grant, Jessica R., Lahr, Daniel J.G., Rey, Federico E., Burleigh, J. Gordon, Gordon, Jeffrey I., Knight, Rob, Molestina, Robert E., Katz, Laura A.

Journal:

Protist Genomics

Year:

2012

Language:

english

File:

PDF, 1.15 MB

english, 2012

3

What Makes a Leaf Tough? Patterns of Correlated Evolution between Leaf Toughness Traits and Demographic Rates among 197 Shade-Tolerant Woody Species in a Neotropical Forest.

Jared W. Westbrook, Kaoru Kitajima, J. Gordon Burleigh, W. John Kress, David L. Erickson, and S. Joseph Wright

Journal:

American Naturalist

Year:

2011

Language:

english

File:

PDF, 568 KB

english, 2011

4

Deep phylogenetic incongruence in the angiosperm clade Rosidae

Sun, Miao, Soltis, Douglas E., Soltis, Pamela S., Zhu, Xinyu, Burleigh, J. Gordon, Chen, Zhiduan

Journal:

Molecular Phylogenetics and Evolution

Year:

2015

Language:

english

File:

PDF, 840 KB

english, 2015

5

Building the avian tree of life using a large-scale, sparse supermatrix

Burleigh, J. Gordon, Kimball, Rebecca T., Braun, Edward L.

Journal:

Molecular Phylogenetics and Evolution

Year:

2015

Language:

english

File:

PDF, 2.83 MB

english, 2015

6

Phylogenetic Signal in Nucleotide Data from Seed Plants: Implications for Resolving the Seed Plant Tree of Life

J. Gordon Burleigh and Sarah Mathews

Journal:

American Journal of Botany

Year:

2004

Language:

english

File:

PDF, 3.22 MB

english, 2004

7

Dispersal predicts hybrid zone widths across animal diversity: Implications for species borders under incomplete reproductive isolation

McEntee, Jay, Burleigh, J. Gordon, Singhal, Sonal

Journal:

American Naturalist

Year:

2020

Language:

english

File:

PDF, 2.55 MB

english, 2020

8

Identifying optimal incomplete phylogenetic data sets from sequence databases

Changhui Yan, J. Gordon Burleigh, Oliver Eulenstein

Journal:

Molecular Phylogenetics and Evolution

Year:

2005

Language:

english

File:

PDF, 262 KB

english, 2005

9

Phylogenetic signal in matK vs. trnK: A case study in early diverging eudicots (angiosperms)

Khidir W. Hilu, Chelsea Black, Diaga Diouf, J. Gordon Burleigh

Journal:

Molecular Phylogenetics and Evolution

Year:

2008

Language:

english

File:

PDF, 2.12 MB

english, 2008

10

An ILP solution for the gene duplication problem

Wen-Chieh Chang, Gordon J Burleigh, David F Fernández-Baca, Oliver Eulenstein

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 248 KB

english, 2011

11

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses

Pawel Górecki, Gordon J Burleigh, Oliver Eulenstein

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 395 KB

english, 2011

12

Robinson-Foulds Supertrees

Mukul S Bansal, J Gordon Burleigh, Oliver Eulenstein, David Fernández-Baca

Journal:

Algorithms for Molecular Biology

Year:

2010

Language:

english

File:

PDF, 394 KB

english, 2010

13

Generic recircumscriptions of Oncidiinae (Orchidaceae: Cymbidieae) based on maximum likelihood analysis of combined DNA datasets

KURT M. NEUBIG, WILLIAM MARK WHITTEN, NORRIS H. WILLIAMS, MARIO A. BLANCO, LORENA ENDARA, JOHN GORDON BURLEIGH, KATIA SILVERA, JOHN C. CUSHMAN, MARK W. CHASE

Journal:

Botanical Journal of the Linnean Society

Year:

2012

Language:

english

File:

PDF, 9.63 MB

english, 2012

14

Triplet supertree heuristics for the tree of life

Harris T Lin, J Gordon Burleigh, Oliver Eulenstein

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 839 KB

english, 2009

15

Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models

Mukul S Bansal, J Gordon Burleigh, Oliver Eulenstein

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 279 KB

english, 2010

16

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence

Chaudhary, Ruchi, Burleigh, J Gordon, Eulenstein, Oliver

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 445 KB

english, 2012

17

Consensus properties for the deep coalescence problem and their application for scalable tree search

Lin, Harris T, Burleigh, J Gordon, Eulenstein, Oliver

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

18

PhyloFinder: An intelligent search engine for phylogenetic tree databases

Duhong Chen, J Gordon Burleigh, Mukul S Bansal, David Fernández-Baca

Journal:

BMC Evolutionary Biology

Year:

2008

Language:

english

File:

PDF, 531 KB

english, 2008

19

Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

J Gordon Burleigh, Khidir W Hilu, Douglas E Soltis

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 641 KB

english, 2009

20

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - Inferring species trees from gene duplication episodes

Burleigh, J. Gordon, Bansal, Mukul S., Eulenstein, Oliver, Vision, Todd J.

Year:

2010

Language:

english

File:

PDF, 1.17 MB

english, 2010

21

Assessing Systematic Error in the Inference of Seed Plant Phylogeny

J. Gordon Burleigh and Sarah Mathews

Journal:

International Journal of Plant Sciences

Year:

2007

Language:

english

File:

PDF, 249 KB

english, 2007

22

Screening for antiproliferative actions of mifepristone: Differential endometrial responses of primates versus rats

DavidW Burleigh, RobertF Williams, Keith Gordon, JamesG Hsiu, GaryD Hodgen

Journal:

Year:

1998

Language:

english

File:

PDF, 213 KB

english, 1998

23

Stability analysis of phylogenetic trees

Sheikh, S. I., Kahveci, T., Ranka, S., Gordon Burleigh, J.

Journal:

Year:

2013

Language:

english

File:

PDF, 934 KB

english, 2013

24

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees

Avinash Ramu, Tamer Kahveci, J Gordon Burleigh

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 303 KB

english, 2012

25

Historical Records of Indian Ocean Giant Tortoise Populations

Stoddart, D. R., Peake, J. F., Gordon, C., Burleigh, R.

Journal:

Philosophical Transactions Biological Sciences

Year:

1979

Language:

english

File:

PDF, 1.64 MB

english, 1979

26

RECURRENT EVOLUTION OF DIOECY IN BRYOPHYTES

McDaniel, Stuart F., Atwood, John, Burleigh, J. Gordon

Journal:

Year:

2013

Language:

english

File:

PDF, 639 KB

english, 2013

27

Molecular Markers and Concepts of Plant Evolutionary Relationships: Progress, Promise, and Future Prospects

Soltis, Douglas E., Moore, Michael J., Burleigh, Gordon, Soltis, Pamela S.

Journal:

Critical Reviews in Plant Sciences

Year:

2009

Language:

english

File:

PDF, 378 KB

english, 2009

28

Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems

Wehe, Andre, Burleigh, J. Gordon, Eulenstein, Oliver

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 367 KB

english, 2013

29

Scombroid Fishes Provide Novel Insights into the Trait/Rate Associations of Molecular Evolution

Qiu, Fan, Kitchen, Andrew, Burleigh, J. Gordon, Miyamoto, Michael M.

Journal:

Journal of Molecular Evolution

Year:

2014

Language:

english

File:

PDF, 870 KB

english, 2014

30

Assembling the Angiosperm Tree of Life: Progress and Future Prospects

Soltis, Douglas E., Moore, Michael J., Burleigh, J. Gordon, Bell, Charles D., Soltis, Pamela S.

Journal:

Annals of the Missouri Botanical Garden

Year:

2010

Language:

english

File:

PDF, 1.90 MB

english, 2010

31

Phylotranscriptomic analysis of the origin and early diversification of land plants

Wickett, Norman J., Mirarab, Siavash, Nguyen, Nam, Warnow, Tandy, Carpenter, Eric, Matasci, Naim, Ayyampalayam, Saravanaraj, Barker, Michael S., Burleigh, J. Gordon, Gitzendanner, Matthew A., Ruhfel,

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 954 KB

english, 2014

32

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

Michael J. Moore, Pamela S. Soltis, Charles D. Bell, J. Gordon Burleigh, Douglas E. Soltis and Michael J. Donoghue

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.53 MB

english, 2010

33

Peeking behind the page: using natural language processing to identify and explore the characters used to classify sea anemones

Daly, Marymegan, Endara, Lorena A., Burleigh, John Gordon

Journal:

Zoologischer Anzeiger - A Journal of Comparative Zoology

Year:

2015

Language:

english

File:

PDF, 925 KB

english, 2015

34

Spectral Partitioning of Phylogenetic Data Sets Based on Compatibility

Chen, Duhong, Burleigh, Gordon J., Fernández-Baca, David

Journal:

Systematic Biology

Year:

2007

Language:

english

File:

PDF, 1.47 MB

english, 2007

35

Finding Our Way through Phenotypes

Deans, Andrew R., Lewis, Suzanna E., Huala, Eva, Anzaldo, Salvatore S., Ashburner, Michael, Balhoff, James P., Blackburn, David C., Blake, Judith A., Burleigh, J. Gordon, Chanet, Bruno, Cooper, Laurel

Journal:

Year:

2015

Language:

english

File:

PDF, 3.19 MB

english, 2015

36

Investigating Evolutionary Questions Using Online Molecular Databases

Puterbaugh, Mary N., Burleigh, J. Gordon

Journal:

The American Biology Teacher

Year:

2001

Language:

english

File:

PDF, 284 KB

english, 2001

37

Supertree Bootstrapping Methods for Assessing Phylogenetic Variation among Genes in Genome-Scale Data Sets

Burleigh, J. Gordon, Driskell, Amy, Sanderson, Michael

Journal:

Systematic Biology

Year:

2006

Language:

english

File:

PDF, 6.88 MB

english, 2006

38

Duplications and losses in gene families of rust pathogens highlight putative effectors

Pendleton, Amanda L., Smith, Katherine E., Feau, Nicolas, Martin, Francis M., Grigoriev, Igor V., Hamelin, Richard, Nelson, C. Dana, Burleigh, J. Gordon, Davis, John M.

Journal:

Frontiers in Plant Science

Year:

2014

Language:

english

File:

PDF, 1.87 MB

english, 2014

39

[ACM Press the 5th ACM Conference - Newport Beach, California (2014.09.20-2014.09.23)] Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '14 - Extracting phylogenetic signals from multi-labeled gene trees and its significance for species tree construction

Cobb, Ryan, Elhesha, Rasha, Burleigh, J. Gordon, Kahveci, Tamer

Year:

2014

Language:

english

File:

PDF, 406 KB

english, 2014

40

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

Hinchliff, Cody E., Smith, Stephen A., Allman, James F., Burleigh, J. Gordon, Chaudhary, Ruchi, Coghill, Lyndon M., Crandall, Keith A., Deng, Jiabin, Drew, Bryan T., Gazis, Romina, Gude, Karl, Hibbett

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

41

MatrixConverter: Facilitating Construction of Phenomic Character Matrices

Liu, Jing, Endara, Lorena, Burleigh, J. Gordon

Journal:

Applications in Plant Sciences

Year:

2015

Language:

english

File:

PDF, 133 KB

english, 2015

42

MOLECULAR SYSTEMATICS OF THE EASTERN NORTH AMERICAN SILENE (CARYOPHYLLACEAE): EVIDENCE FROM NUCLEAR ITS AND CHLOROPLAST trnL INTRON SEQUENCES

J. Gordon Burleigh and Timothy P. Holtsford

Journal:

Year:

2003

Language:

english

File:

PDF, 980 KB

english, 2003

43

From Field and Study

S. Dillon Ripley, Alexander Wetmore, Thomas D. Burleigh, Alden H. Miller, Patrick J. Gould, Gordon W. Gullion, W. E. Clyde Todd, R. M. Bond, Robert C. Stebbins, Raymond A. Paynter, Jr. and Richard C.

Journal:

Year:

1957

Language:

english

File:

PDF, 308 KB

english, 1957

44

The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

Tiley, George P., Burleigh, J. Gordon

Journal:

BMC Evolutionary Biology

Year:

2015

Language:

english

File:

PDF, 1.33 MB

english, 2015

45

Investigating Evolutionary Questions Using Online Molecular Databases

Mary N. Puterbaugh and J. Gordon Burleigh

Journal:

The American Biology Teacher

Year:

2001

Language:

english

File:

PDF, 1.97 MB

english, 2001

46

The Terrestrial Ecology of Aldabra || Historical Records of Indian Ocean Giant Tortoise Populations

D. R. Stoddart, J. F. Peake, C. Gordon and R. Burleigh

Journal:

Philosophical Transactions of the Royal Society of London Series B Biological Sciences (1934-1990)

Year:

1979

Language:

english

File:

PDF, 1.68 MB

english, 1979

47

Supertree Bootstrapping Methods for Assessing Phylogenetic Variation among Genes in Genome-Scale Data Sets

J. Gordon Burleigh, Amy C. Driskell and Michael J. Sanderson

Journal:

Systematic Biology

Year:

2006

Language:

english

File:

PDF, 3.00 MB

english, 2006

48

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data

Tiley, George P., Ané, Cécile, Burleigh, J. Gordon

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.01 MB

english, 2016

49

Erratum to: The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

Tiley, George P., Burleigh, J. Gordon

Journal:

BMC Evolutionary Biology

Year:

2015

Language:

english

File:

PDF, 294 KB

english, 2015

50

Performance of Flip Supertree Construction with a Heuristic Algorithm

Oliver Eulenstein, Duhong Chen, J. Gordon Burleigh, David Fernández-Baca and Michael J. Sanderson

Journal:

Systematic Biology

Year:

2004

Language:

english

File:

PDF, 2.14 MB

english, 2004

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